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Satellog Database Documentation


APPENDIX H

 

Disease-associated repeats

 

 

Table 1:  Summary of disease-associated repeats from Cleary and Pearson, 2003 as detected in Satellog.  Each disease is associated with one or more repeat co-ordinates.

 

 

Disease

chr

start

end

unit

length

prostate cancer risk

20

46953964

46953975

CAG

4

prostate cancer risk

20

46965237

46965257

GCA

7

prostate cancer risk

20

46965259

46965287

CAG

9

dentatorubral-pallidoluysian atrophy / Haw River Syndrome

12

6916153

6916199

CAG

15

Huntington's Disease

4

3108016

3108074

CAG

19

Huntington's Disease-like 2

16

87419384

87419431

CTG

16

spinal and bulbar muscular atrophy

X

65631950

65632018

GCA

23

spinal and bulbar muscular atrophy

X

65632034

65632052

GCA

6

spinocerebellar ataxia 1

6

16435844

16435887

TGC

14

spinocerebellar ataxia 1

6

16435895

16435934

TGC

13

spinocerebellar ataxia 2

12

110448707

110448734

GCT

9

spinocerebellar ataxia 2

12

110448736

110448776

TGC

13

spinocerebellar ataxia 3 / Machado-Joseph Disease

14

90527396

90527419

CTG

8

spinocerebellar ataxia 6

19

13179673

13179712

CTG

13

spinocerebellar ataxia 7

3

63855699

63855730

GCA

10

spinocerebellar ataxia 17

6

170727556

170727614

CAG

19

infantile spasm syndrome

X

24393203

24393234

GCC

10

cleidocranial dysplasia

6

45437342

45437356

GGC

5

cleidocranial dysplasia

6

45437358

45437374

GCG

5

hand-foot-genital syndrome

7

26981724

26981734

GCC

3

hand-foot-genital syndrome

7

26981742

26981753

GCC

4

hand-foot-genital syndrome

7

26981820

26981830

GCC

3

hand-foot-genital syndrome

7

26981847

26981858

GCC

4

synpolydactyly

2

177160255

177160270

GGC

5

synpolydactyly

2

177160330

177160344

GGC

5

synpolydactyly

2

177160355

177160371

GCG

5

oculopharyngeal muscular dystrophy

14

21780809

21780829

GGC

7

holoprosencephaly

13

98332395

98332411

GCG

5

holoprosencephaly

13

98332445

98332454

GGC

3

holoprosencephaly

13

98335704

98335714

GCG

3

holoprosencephaly

13

98335716

98335729

GCG

4

holoprosencephaly

13

98335731

98335744

GCG

4

Myotonic Dystrophy

19

50965303

50965364

CAG

20

unknown

14

75483803

75483834

TGC

10

unknown

14

75483836

75483855

TGC

6

possible bipolar disorder

18

51402372

51402447

AGC

25

spinocerebellar ataxia 12

5

146286801

146286832

GCT

10

Fragile X (A subtype)

X

145661208

145661218

GGC

3

Fragile X (A subtype)

X

145661287

145661316

GGC

10

Fragile X (E subtype)

X

146287684

146287698

GCC

5

Fragile X (E subtype)

X

146287711

146287757

GCC

15

Fragile X (E subtype)

X

146287806

146287815

CCG

3

Fragile X (E subtype)

X

146287817

146287826

GCC

3

Fragile X (E subtype)

X

146288149

146288162

CCG

4

Fragile X (F subtype)

X

147419081

147419105

CGC

8

Jacobsen Syndrome

11

118614652

118614685

CGG

11

Myotonic Dystrophy 2

3

130212329

130212359

CAGG

7

progressive myoclonic epilepsy type 1

21

44052526

44052562

GCGCGGGGCGGG

3

spinocerebellar ataxia 10

22

44467801

44467870

ATTCT

14

Friedreich's ataxia

9

67109320

67109339

AAG

6

spinocerebellar ataxia 8

13

68511517

68511562

CTG

15

 

 


 

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