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Satellog Database
Satellog runs on:
EnsEMBL 19_34b
v.34 of the human genome.
Repeats
Limit to (uncheck for entire genome)
Chromosome name (size in bp):
1 (245,523,000)
2 (243,018,000)
3 (199,506,000)
4 (191,506,000)
5 (180,858,000)
6 (170,976,000)
7 (158,628,000)
8 (146,275,000)
9 (138,429,000)
10 (135,414,000)
11 (134,452,000)
12 (132,450,000)
13 (114,143,000)
14 (106,369,000)
15 (100,339,000)
16 (88,827,000)
17 (78,775,000)
18 (76,117,000)
19 (63,812,000)
20 (62,436,000)
21 (46,944,000)
22 (49,555,000)
X (154,824,000)
Y (57,702,000)
M (17,000)
From
to
Limit to repeats of
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
bp repeat units
Repeat length (choose one):
less than
greater than or equal to
between
and
any
Repeat unit
Select the top
% longest repeats of the above repeat unit
The percentile rank is calculated for each repeat class.
If repeat rank is checked without an input repeat unit, then all repeat units with that cut-off will be returned.
Include in output:
chromosome
start
end
repeat period
repeat unit
repeat length
repeat sequence
repeat class
percentile rank
Transcripts
Limit to repeats within
60000
45000
30000
15000
intron
cds
3utr
5utr
3utr-cds
5utr-cds
3utr-intron
5utr-intron
3utr-intron boundary
5utr-intron boundary
3utr-ncs
5utr-ncs
cds-ncs
intron-exon boundary
Limit to repeats encoding the peptide sequence
Include in output:
Gene Location
Peptide Sequence
EnsEMBL Transcript ID
Genes
Limit to repeats within gene with HUGO name
or EnsEMBL Gene ID
Include in output:
HUGO name
EnsEMBL Gene ID
Gene Description
GO terms
PDB terms
MIM terms
Gene Expression in GeneNote (Nov 7, 2003 Release)
Limit to repeats expressed in the
Bone Marrow
Brain
Heart
Kidney
Liver
Lung
Pancreas
Prostrate
Skeletal Muscle
Spinal Cord
Spleen
Thymus
Include in output:
Affymetrix Tag
Expression value
Call
Number
Tissue
Polymorphism within UniGene clusters
Limit to genes with evidence of polymorphism
Include in output:
Number of Hits
Minimum Length
Maximum Length
Mean Length
Standard Deviation
Include in output:
UniGene cluster
UniGene sequence
Length within UniGene Sequence
Output Format
HTML
Text, fixed width
Text, comma separated
Text, tab delimited
File Compression
None
gzip (.gz)
File Info
Name for this dataset
Some queries take longer than others to be processed.
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