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Satellog Database Downloads


The files below include the perl scripts associated with satellog.
See Documentation for more detailed information.

Perl Scripts

VersionSizeDateDownloadDescription
1.01,687 bytes2004-11-05genenote_parser.plGenenote parser
1.01,806 bytes2004-11-05generate_pvalues.plGenerate p values
1.03,942 bytes2004-11-05mapugc.plChromosome Coordinates for Unigene Clusters
1.0706 bytes2004-11-05parse_dis.plTest repeat purity of repeats detected
1.01,372 bytes2004-11-05parse_unigene_unique.plUnique Unigene Parser
1.0814 bytes2004-11-05reg_ex_test.plInsert repeat classes into Satellog
1.01,624 bytes2004-11-05repeat_classer2.plDetermine Repeat Macroclass
(Used prior to repeatalyzer)
1.041,366 bytes2004-11-05repeatalyzer.plRepeatAlyzer

Disease Associated Repeats Detected with Satellog

VersionSizeDateDownloadDescription
1.015.9 kb2004-11-05dis_repeats.csvComma delimited file
1.049.2 kb2004-11-05dis_repeats.xlsMicrosoft Excel file

Database zipped downloads

VersionSizeDateDownloadDescription
1.0311 Mb2004-11-05satellog_db_tables.zip.zip File
1.0243 Mb2004-11-05satellog_db_tables.tar.gz.tar.gz File

Satellog Data by Individual Table

VersionDateFile Content.zip Size (kb).zip Download.gz Size (kb).gz Download
1.02004-11-05satellog.affy.sql 8,463 satellog.affy.zip 8,162 satellog.affy.sql.gz
1.02004-11-05satellog.class_stats.sql232 satellog.class_stats.zip 231 satellog.class_stats.sql.gz
1.02004-11-05satellog.disease.sql 2 satellog.disease.zip 2 satellog.disease.sql.gz
1.02004-11-05satellog.ens_db.sql 895 satellog.ens_db.zip 883 satellog.ens_db.sql.gz
1.02004-11-05satellog.gc.sql 70,250 satellog.gc.zip 10,249 satellog.gc.sql.gz
1.02004-11-05satellog.genenote.sql 12,355 satellog.genenote.zip 12,287 satellog.genenote.sql.gz
1.02004-11-05satellog.go.sql 424 satellog.go.zip 421 satellog.go.sql.gz
1.02004-11-05satellog.linkage.sql 4 satellog.linkage.zip 4 satellog.linkage.sql.gz
1.02004-11-05satellog.mim.sql 89 satellog.mim.zip 88 satellog.mim.sql.gz
1.02004-11-05satellog.pdb.sql 30 satellog.pdb.zip 30 satellog.pdb.sql.gz
1.02004-11-05satellog.rep_class.sql 5,221 satellog.rep_class.zip 5,301 satellog.rep_class.sql.gz
1.02004-11-05satellog.repeats.sql 152,635 satellog.repeats.zip 145,945 satellog.repeats.sql.gz
1.02004-11-05satellog.transcripts.sql50,633 satellog.transcripts.zip 49,430 satellog.transcripts.sql.gz
1.02004-11-05satellog.ugcount.sql 8,334 satellog.ugcount.zip 8,309 satellog.ugcount.sql.gz
1.02004-11-05satellog.ugstats.sql 501 satellog.ugstats.zip 497 satellog.ugstats.sql.gz
1.02004-11-05satellog.unigene.sql 1,751 satellog.unigene.zip 1,737 satellog.unigene.sql.gz

TRF Raw Files

VersionDateFile Content.zip Size (kb).zip Download.gz Size (kb).gz Download
1.02004-11-05TRF_Raw_Files_All 148,737 TRF_Raw_Files_All.zip 143,583 TRF_Raw_Files_All.tar.gz
1.02004-11-05chr1.fa.3.4090.80.10.30.16.dat 11,705 chr1.fa.3.4090.4090.80.10.30.16.zip 11,298 chr1.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr2.fa.3.4090.80.10.30.16.dat 12,243 chr2.fa.3.4090.4090.80.10.30.16.zip 11,821 chr2.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr3.fa.3.4090.80.10.30.16.dat 9,815 chr3.fa.3.4090.4090.80.10.30.16.zip 9,473 chr3.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr4.fa.3.4090.80.10.30.16.dat 9,542 chr4.fa.3.4090.4090.80.10.30.16.zip 9,207 chr4.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr5.fa.3.4090.80.10.30.16.dat 8,964 chr5.fa.3.4090.4090.80.10.30.16.zip 8,651 chr5.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr6.fa.3.4090.80.10.30.16.dat 8,531 chr6.fa.3.4090.4090.80.10.30.16.zip 8,233 chr6.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr7.fa.3.4090.80.10.30.16.dat 8,139 chr7.fa.3.4090.4090.80.10.30.16.zip 7,859 chr7.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr8.fa.3.4090.80.10.30.16.dat 7,275 chr8.fa.3.4090.4090.80.10.30.16.zip 7,022 chr8.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr9.fa.3.4090.80.10.30.16.dat 6,018 chr9.fa.3.4090.4090.80.10.30.16.zip 5,811 chr9.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr10.fa.3.4090.80.10.30.16.dat 6,961 chr10.fa.3.4090.4090.80.10.30.16.zip 6,721 chr10.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr11.fa.3.4090.80.10.30.16.dat 6,756 chr11.fa.3.4090.4090.80.10.30.16.zip 6,521 chr11.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr12.fa.3.4090.80.10.30.16.dat 6,843 chr12.fa.3.4090.4090.80.10.30.16.zip 6,608 chr12.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr13.fa.3.4090.80.10.30.16.dat 4,833 chr13.fa.3.4090.4090.80.10.30.16.zip 4,662 chr13.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr14.fa.3.4090.80.10.30.16.dat 4,517 chr14.fa.3.4090.4090.80.10.30.16.zip 4,360 chr14.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr15.fa.3.4090.80.10.30.16.dat 4,235 chr15.fa.3.4090.4090.80.10.30.16.zip 4,091 chr15.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr16.fa.3.4090.80.10.30.16.dat 4,568 chr16.fa.3.4090.4090.80.10.30.16.zip 4,412 chr16.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr17.fa.3.4090.80.10.30.16.dat 4,431 chr17.fa.3.4090.4090.80.10.30.16.zip 4,281 chr17.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr18.fa.3.4090.80.10.30.16.dat 3,814 chr18.fa.3.4090.4090.80.10.30.16.zip 3,682 chr18.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr19.fa.3.4090.80.10.30.16.dat 3,475 chr19.fa.3.4090.4090.80.10.30.16.zip 3,357 chr19.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr20.fa.3.4090.80.10.30.16.dat 3,220 chr20.fa.3.4090.4090.80.10.30.16.zip 3,109 chr20.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr21.fa.3.4090.80.10.30.16.dat 1,816 chr21.fa.3.4090.4090.80.10.30.16.zip 1,753 chr21.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chr22.fa.3.4090.80.10.30.16.dat 2,006 chr22.fa.3.4090.4090.80.10.30.16.zip 1,940 chr22.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chrX.fa.3.4090.80.10.30.16.dat 7,636 chrX.fa.3.4090.4090.80.10.30.16.zip 7,369 chrX.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chrY.fa.3.4090.80.10.30.16.dat 1,384 chrY.fa.3.4090.4090.80.10.30.16.zip 1,337 chrY.fa.3.4090.4090.80.10.30.16.dat.gz
1.02004-11-05chrM.fa.3.4090.80.10.30.16.dat 1 chrM.fa.3.4090.4090.80.10.30.16.zip 1 chrM.fa.3.4090.4090.80.10.30.16.dat.gz

Supplementary Data

VersionDateFile Content.zip Size.zip Download.gz Size.gz Download
1.02005-04-15Figure S1 - Repeat density per chromosome 5.0 kb FigureS1.zip 4.9 kb FigureS1.gz
1.02004-04-15Table S1 - Repeats by chromosome 4.9 kb TableS1.zip 4.8 kb TableS1.gz
1.02004-04-15Table S2 - Period Stats 28.7 kb TableS2.zip 28.5 kb TableS2.gz
1.02004-04-15Table S3 - Repeat Units by chromosome 4.6 Mb TableS3.zip 4.6 Mb TableS3.gz
1.02004-04-15Table S4 - Density of Repeat Type by Gene Region Part I*1.7 Mb TableS4.zip 1.7 Mb TableS4.gz
1.02004-04-29Table S4.2 - Density of Repeat Type by Gene Region Part II*3.2 Mb TableS4.2.zip 3.2 Mb TableS4.2.gz
*The Density of Repeat Type by Gene Region tables are separated into 2 files due to the limitations of Microsoft Excel file size.

 

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